Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs113063657 chr13:114176846 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs113137369 chr17:74699440 G/A 0.00018 176 26.27 19.57 13.5 KM Plot
PCPG rs113137542 chr9:86649666 T/A 1.07E-5 173 26.22 23.83 10.3 KM Plot
PCPG rs113146460 chr7:1105164 C/G 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs113155017 chr3:182617167 C/G 1.06E-5 174 25.87 27.2 11.78 KM Plot
PCPG rs11316539 chr3:136652552 CT/C 0.00021 172 17.6 27.23 23.83 KM Plot
PCPG rs113174759 chr16:1766459 T/C 0 173 25.6 15.85 2.93 KM Plot
PCPG rs113221697 chr7:1108743 C/T 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs113223941 chr6:26538543 C/A 4.97E-7 177 25.08 29.57 10.68 KM Plot
PCPG rs11327549 chr22:21293695 AT/A 0.000101 174 12.93 31.2 24.62 KM Plot
PCPG rs113343281 chr22:50234552 G/C 0.000167 175 25.67 20.17 15.18 KM Plot
PCPG rs113365567 chr7:1108785 T/C 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs113375877 chr3:176864354 G/C 8.27E-7 171 24.23 31.8 8.62 KM Plot
PCPG rs113382723 chr12:56691773 AC/A 9.45E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs11344584 chr3:80551839 CT/C 1.27E-5 177 19.2 24.53 27.2 KM Plot